Galaxy
Dataset
File upload
Importation
Goal
How to import the input dataset within the Galaxy instance?
Prerequisites
List of software: - 7zip - Cyberduck (or WinSCP or Filezilla)
Introduction
Import your data is the first step in an analysis but is not so trivial.
Summary
- Data preparation
- Choose a FTP Client
- Upload
Contents
Conclusion
Uploading dataset within Galaxy isn't so complicated. Upstream, it's necessary to well describe the experimental plan in the sampleMetadata.
References
Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Čech, John Chilton, Dave Clements, Nate Coraor, Björn Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, and Daniel Blankenberg. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update, Nucleic Acids Research, Volume 46, Issue W1, 2 July 2018, Pages W537–W544, doi:10.1093/nar/gky379